Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

Displaying 1 - 11 of 11
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File Organism Size Type Description
Biomphalaria-glabrata-BB02_CONTIGS_BglaB1.fa.gz Biomphalaria glabrata 273.66 MB Contigs BB02 strain genomic contig sequences, BglaB1 assembly.
Biomphalaria-glabrata-BB02_SCAFFOLDS_BglaB1.fa.gz Biomphalaria glabrata 259.74 MB Scaffolds BB02 strain genomic scaffold sequences, BglaB1 assembly, softmasked using RepeatMasker, Dust, and TRF.
Biomphalaria-glabrata-BB02_PEPTIDES_BglaB1.6.fa.gz Biomphalaria glabrata 7.32 MB Peptides BB02 strain peptide sequences, BglaB1.6 geneset.
Biomphalaria-glabrata-BB02_TRANSCRIPTS_BglaB1.6.fa.gz Biomphalaria glabrata 19.69 MB Transcripts BB02 strain transcript sequences, BglaB1.6 geneset.
Biomphalaria-glabrata-BB02_BASEFEATURES_BglaB1.6.gff3.gz Biomphalaria glabrata 13.34 MB Basefeatures BB02 strain BglaB1.6 geneset in GFF3 format.
Biomphalaria-glabrata-BB02_BASEFEATURES_BglaB1.6.gtf.gz Biomphalaria glabrata 7.18 MB Basefeatures BB02 strain BglaB1.6 geneset in GTF (v2.2) format.
Biomphalaria-glabrata-BB02_CONTIG2SCAFFOLD_BglaB1.agp.gz Biomphalaria glabrata 4.05 MB Contig to Scaffold mapping AGP (v2.0) file relating contigs to scaffolds for the Biomphalaria glabrata BB02 strain, BglaB1 assembly.
Biomphalaria-glabrata-BB02_MAPPINGS_BglaB1.4-BglaB1.5.txt Biomphalaria glabrata 109.62 KB ID Mapping Stable ID mapping between genesets BglaB1.4 and BglaB1.5 (RNA gene update)
Biomphalaria-glabrata-BB02_REPEATS.lib Biomphalaria glabrata 613.7 KB RepeatMasker library RepeatMasker library file of repeats for Biomphalaria glabrata, BB02 strain.
Biomphalaria-glabrata-BB02_REPEATFEATURES_BglaB1.gff3.gz Biomphalaria glabrata 60.41 MB Repeat features BB02 strain BglaB1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Biomphalaria-glabrata_EXPR-STATS_VB-2019-06.txt.gz Biomphalaria glabrata 2.27 MB Expression statistics Tab-delimited, log2 transformed expression values, gene x condition: mean, variance and number of replicates. The means are no longer median-subtracted.